fastobo 0.11.1
  • GitHub
  • Conda Recipe
  • Documentation
      • Installation
      • Examples
      • Library Reference
      • Changelog
      • About
  • Installation »
  • Source
  • fastobo
    • About
    • Library
    • Miscellaneous
    • Indices and tables

fastobo¶

Faultless AST for Open Biomedical Ontologies in Python.

Actions AppVeyor License Source PyPI Wheel Bioconda Versions Implementation Changelog Docs Issues DOI Downloads

About¶

fastobo is a Rust library implementing a reliable parser for the OBO file format 1.4. This extension module exports idiomatic Python bindings that can be used to load, edit and serialize ontologies in the OBO format.

Library¶

  • Installation
    • Precompiled Wheels
    • Bioconda package
    • Building from source
  • Examples
    • Checking empty descriptions
    • Looking for obsolete terms without replacements
    • Loading an OBO ontology into a networkx graph
  • Library Reference
    • Functions
    • Data structures
    • Exceptions
  • Changelog
    • Unreleased
    • v0.11.1 - 2022-01-23
    • v0.11.0 - 2022-01-23
    • v0.10.2-post1 - 2021-09-19
    • v0.10.2 - 2021-08-02
    • v0.10.1 - 2021-03-30
    • v0.10.0 - 2021-02-19
    • v0.9.1 - 2020-08-15
    • v0.9.0 - 2020-07-29
    • v0.8.2 - 2020-06-16
    • v0.8.0 - 2020-06-12
    • v0.7.2 - 2020-02-12
    • v0.7.1 - 2020-02-11
    • v0.7.0 - 2020-01-24
    • v0.6.2 - 2020-01-18
    • v0.6.1 - 2019-11-19
    • v0.6.0 - 2019-10-08
    • v0.5.4 - 2019-10-08
    • v0.5.3 - 2019-10-06
    • v0.5.2 - 2019-09-28
    • v0.5.1 - 2019-09-19
    • v0.5.0 - 2019-09-18
    • v0.4.2 - 2019-09-16
    • v0.4.1 - 2019-09-15
    • v0.4.0 - 2019-09-14
    • v0.3.3 - 2019-09-10
    • v0.3.2 - 2019-08-29
    • v0.3.1 - 2019-08-08
    • v0.3.0 - 2019-08-08
    • v0.2.2 - 2019-07-24
    • v0.2.1 - 2019-07-23
    • v0.2.0 - 2019-07-22
    • v0.1.1 - 2019-06-28
    • v0.1.0 - 2019-06-28

Miscellaneous¶

  • About
    • Authors
    • Citation
    • License

Indices and tables¶

  • Index

  • Module Index

  • Search Page

Back to top

© Copyright 2019-2022, Martin Larralde.
Created using Sphinx 3.5.4.