fastobo

Faultless AST for Open Biomedical Ontologies in Python.

About

fastobo is a Rust library implementing a reliable parser for the OBO file format 1.4. This extension module exports idiomatic Python bindings that can be used to load, edit and serialize ontologies in the OBO format.

Library

• Installation
  • Precompiled Wheels
  • Bioconda package
  • Building from source
• Examples
  • Checking empty descriptions
  • Looking for obsolete terms without replacements
  • Loading an OBO ontology into a networkx graph
• Library Reference
  • Functions
  • Data structures
  • Exceptions
• Changelog
  • Unreleased
  • v0.12.2 - 2022-12-06
  • v0.12.1 - 2022-07-08
  • v0.12.0 - 2022-07-08
  • v0.11.1 - 2022-01-23
  • v0.11.0 - 2022-01-23
  • v0.10.2-post1 - 2021-09-19
  • v0.10.2 - 2021-08-02
  • v0.10.1 - 2021-03-30
  • v0.10.0 - 2021-02-19
  • v0.9.1 - 2020-08-15
  • v0.9.0 - 2020-07-29
  • v0.8.2 - 2020-06-16
  • v0.8.0 - 2020-06-12
  • v0.7.2 - 2020-02-12
  • v0.7.1 - 2020-02-11
  • v0.7.0 - 2020-01-24
  • v0.6.2 - 2020-01-18
  • v0.6.1 - 2019-11-19
  • v0.6.0 - 2019-10-08
  • v0.5.4 - 2019-10-08
  • v0.5.3 - 2019-10-06
  • v0.5.2 - 2019-09-28
  • v0.5.1 - 2019-09-19
  • v0.5.0 - 2019-09-18
  • v0.4.2 - 2019-09-16
  • v0.4.1 - 2019-09-15
  • v0.4.0 - 2019-09-14
  • v0.3.3 - 2019-09-10
  • v0.3.2 - 2019-08-29
  • v0.3.1 - 2019-08-08
  • v0.3.0 - 2019-08-08
  • v0.2.2 - 2019-07-24
  • v0.2.1 - 2019-07-23
  • v0.2.0 - 2019-07-22
  • v0.1.1 - 2019-06-28
  • v0.1.0 - 2019-06-28

Miscellaneous

• About
  • Authors
  • Citation
  • License

Indices and tables

• Index

• Module Index

• Search Page